Plasmodium Falciparum Chemical Space

Downloaded from ChEMBL on 05/02/25

What is IC₅₀?

The IC₅₀ score is the concentration of a drug required to inhibit 50% of a target’s biological activity, measured in molarity (µM or nM). It provides a quantitative measure of drug potency.

How is it measured?

Through dose–response experiments: a compound is applied at varying concentrations to a culture of the target, and the resulting growth or metabolic activity is quantified (e.g., via fluorescence). The IC₅₀ is the midpoint of the resulting sigmoidal curve.

Why is IC₅₀ important?
  • Standard pharmacology metric—widely used in ChEMBL
  • Enables cross-study comparability
  • More abundant than rarer endpoints (IC₉₀, EC₉₀), giving more data
  • Consistent reporting yields stable signals for ML models
  • Primary screening output in malaria drug-discovery pipelines
Data Preprocessing Results

Initial Number of Data Points: 57,490
Final Number of Molecule-Strain Pairings: 40,324

Associated Bioactivities (969,219 hits)
Associated Assays

UMAP vs t-SNE 3D (Potency Buckets)

UMAP
t-SNE